Metamenu

Model overview

PhenDB uses Support Vector Machine (SVM) models for the prediction of traits. Below is a list of all models (click model name for further information). For each model, the maximal mean balanced accuracy (given a 100% complete, 0% contaminated metagenomic bin) is given.

Legend: T = from text mining E = from expert opinion M = inferred from marker gene presence C = from Feldbauer et al 2015

Model name Description Training date Maximal accuracy
but Organism is producing butyric_acid 2020-12-15 15:13:49 0.93
ARCHAEA Organism is an archaeon (C) 2020-12-15 15:13:49 1.00
SYMBIONT Organism has an obligate intracellular lifestyle (C) 2020-12-15 15:13:50 0.99
for Organism is producing formic_acid 2020-12-15 15:13:50 0.78
sporulation Organism is capable of producing endospores for persistence (T) 2020-12-15 15:13:50 0.96
AOB Organism is part of the clade of ammonia-oxidizing bacteria (E) 2020-12-15 15:13:50 0.97
AUTO Organism is capable of growth with CO2 as sole carbon source (C) 2020-12-15 15:13:51 0.87
lac_L Organism is producing L_lactic_acid 2020-12-15 15:13:51 0.81
gram_stain Cells of organism stain Gram-positive (+) or Gram-negative (-) (T) 2020-12-15 15:13:51 0.98
nif Organism is capable of fixing N2 (E) 2020-12-15 15:13:51 0.92
succ Organism is producing succinic_acid 2020-12-15 15:13:51 0.90
NOB Organism is part of the clade of nitrite-oxidizing bacteria (E) 2020-12-15 15:13:52 0.81
glc_D Organism is utilizing D_glucose 2020-12-15 15:13:52 0.82
h2 Organism is producing hydrogen 2020-12-15 15:13:52 0.83
T4SS Organism expresses a Type IV secretion system (C) 2020-12-15 15:13:52 0.91
ac Organism is producing acetic_acid 2020-12-15 15:13:52 0.77
lac_D Organism is producing D_lactic_acid 2020-12-15 15:13:52 0.86
phototrophy 2020-12-15 15:13:53 0.91
indole Organism is producing indole 2020-12-15 15:13:53 0.83
actn_R Organism is producing R_acetoin 2020-12-15 15:13:53 0.90
Sulfate_reducer Organism is capable of using sulfate as terminal electron acceptor (T) 2020-12-15 15:13:53 0.96
THERM Organism has a thermophilic lifestyle (C) 2020-12-15 15:13:54 0.79
Saccharolytic Organism has a Saccharolytic lifestyle 2020-12-15 15:13:54 0.91
Aerobe Organism is capable of aerobic respiration (T) 2020-12-15 15:13:54 0.95
Asaccharolytic Organism has a Asaccharolytic lifestyle 2020-12-15 15:13:55 0.75
Fermentative Organism has a Fermentative lifestyle 2020-12-15 15:13:56 0.82
isobut Organism is producing isobutyric_acid 2020-12-15 15:13:56 0.85
HALO Organism has a halophilic lifestyle (C) 2020-12-15 15:13:56 0.70
nonfermentative Organism has a nonfermentative lifestyle 2020-12-15 15:13:56 0.75
T6SS Organism expresses a Type VI secretion system (C) 2020-12-15 15:13:56 0.95
isoval Organism is producing isovaleric_acid 2020-12-15 15:13:56 0.91
THERM_OR_TOLERANT Organism has a thermophilic lifestyle or is thermotolerant (C) 2020-12-15 15:13:57 0.81
btoh Organism is producing 1_butanol 2020-12-15 15:13:57 0.90
PSYCHRO Organism has a psychrophilic lifestyle (C) 2020-12-15 15:13:57 0.63
etoh Organism is producing ethanol 2020-12-15 15:13:57 0.78
METHANOTROPH Organism is capable of growth with methane as the sole carbon source (C) 2020-12-15 15:13:57 0.97
motility Organism is capable of self-propelled motion (T) 2020-12-15 15:13:57 0.95
Anaerobe Organism is capable of anaerobic respiration (T) 2020-12-15 15:13:58 0.93
T3SS Organism expresses a Type III secretion system (C) 2020-12-15 15:13:58 0.93